Generating a tidy dataset
The first step we took to produce a tidy dataset was to translate the variable names from english to spanish, to do this, we first attempted a programatic method; Using the google translate API, each variable name was attempted to translate from Spanish to English.
path = "./../../data/PPD_hairCortisol_PlosOne_.sav"
dataset= read_sav(path)
write.csv(dataset, file = "./../../data/data_span.csv")
import googletrans as gt
import pandas as pd
data = pd.read_csv('./../../data/data_span.csv',encoding = "ISO-8859-1")
trans = gt.Translator()
with open("./../../data/data_programatic_translation.csv", 'w') as f:
f.write('original, translated\n')
for old_col in data.columns.values:
new_col = trans.translate(old_col, src = 'spanish', dest='en').text
f.write(old_col + ',' + new_col + '\n')
data.rename(columns = {old_col:new_col}, inplace = True)
data.to_csv( "./../../data/data_eng.csv" )
This produces two files, first, a new dataset csv with the header names translated (attempted) and two, a csv documenting the original variable name and the translated variable name.
english csv
translation mapping
ALL VARIABLES WE NEED TO INCLUDE IN OUR DATASET
These listed variables are those required to reproduce the paper plots or extend the study.
We will try to manually review, translate and generate a codebook (Good tutorial: github) in the following steps.
df = read.csv("./../../data/data_eng.csv", header = TRUE)
df %>% variable.names()
## [1] "X" "Unnamed..0"
## [3] "Competitor" "Age"
## [5] "FirstPregnancy" "Pregnancy.type"
## [7] "Level_Studies" "SLaboral"
## [9] "Appearance" "Sport"
## [11] "Profession" "What.study"
## [13] "Origin" "EPDS"
## [15] "depreposparto" "StateCivilDIcotomica"
## [17] "EmploymentSituationDico" "PetDicotomica"
## [19] "NationalityDicotomica" "PregnancyMethodDico"
## [21] "PreviousMiscarriagesDico" "WantedPregnancyDico"
## [23] "Occupation123" "LNCORTISOL1"
## [25] "LNCORTISOL2" "LNCORTISOL3"
## [27] "SexFetal" "PDQ1"
## [29] "PDQ2" "PDQ3"
## [31] "EEP1" "EEP2"
## [33] "EEP3" "SOMATIZATIONS1"
## [35] "OBSESSIONS.AND.COMPULSIONS1" "SENSITIVIDADINTERPERSONAL1"
## [37] "DEPRESSION1" "ANXIETY1"
## [39] "HOSTILIDAD1" "ANSIEDADFOBICA1"
## [41] "IDEACIÃ.NPARANOIDE1" "PSICOTICISMO1"
## [43] "IGS1" "SP1"
## [45] "PSDI1" "SOMATIZATIONS2"
## [47] "OBSESSIONS.AND.COMPULSIONS2" "INSTRUMENT.SENSITIVITY2"
## [49] "DEPRESSION2" "ANXIETY2"
## [51] "HOSTILITY2" "ANSIEDADFOBICA2"
## [53] "IDEACIÃ.NPARANOIDE2" "PSICOTICISMO2"
## [55] "IGS2" "SP2"
## [57] "PSDI2" "SOMATIZATIONS3"
## [59] "OBSESSIONS.AND.COMPULSIONS3" "INSTRUMENT.SENSITIVITY3"
## [61] "DEPRESSION3" "ANXIETY3"
## [63] "HOSTILIDAD3" "ANSIEDADFOBICA3"
## [65] "IDEACIÃ.NPARANOIDE3" "PSICOTICISMO3"
## [67] "IGS3" "SP3"
## [69] "PSDI3" "SexFetalDico"
## [71] "Cortisol1" "Cortisol2"
## [73] "Cortisol3"
df <- df %>% select(-X, -Unnamed..0)
# THIS IS WHERE WE CAN DROP UNUNSED VARIABLES, MUTATE NAMES AND ADD META DATA DESCRIBING VARIABLES
my_codebook <- codebook(df)
## Warning in codebook(df): The variables session, created, ended have to
## be defined for automatic survey repetition detection to work. Set to no
## repetition by default.
#fh <- file("./../../data/codebook.html")
#writeLines(my_codebook, fh)
#close(fh)
my_codebook
knitr::asis_output(survey_overview)
Items
knitr::asis_output(paste0(scales_items, sep = "\n\n\n", collapse = "\n\n\n"))
Competitor
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| Competitor |
numeric |
29 |
44 |
73 |
22.5 |
12.85 |
1 |
11.75 |
22.5 |
33.25 |
44 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
Age
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| Age |
numeric |
29 |
44 |
73 |
32.41 |
3.88 |
24 |
30 |
32 |
36 |
39 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
FirstPregnancy
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| FirstPregnancy |
numeric |
29 |
44 |
73 |
0.64 |
0.49 |
0 |
0 |
1 |
1 |
1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
Pregnancy.type
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| Pregnancy.type |
numeric |
29 |
44 |
73 |
1.32 |
0.67 |
1 |
1 |
1 |
1 |
3 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
Level_Studies
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| Level_Studies |
numeric |
29 |
44 |
73 |
2.75 |
0.49 |
1 |
3 |
3 |
3 |
3 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
SLaboral
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| SLaboral |
numeric |
29 |
44 |
73 |
2.18 |
0.95 |
1 |
2 |
2 |
2 |
5 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
Appearance
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| Appearance |
numeric |
29 |
44 |
73 |
0.43 |
0.5 |
0 |
0 |
0 |
1 |
1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
Sport
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| Sport |
numeric |
29 |
44 |
73 |
0.59 |
0.5 |
0 |
0 |
1 |
1 |
1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
Profession
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| Profession |
numeric |
29 |
44 |
73 |
4.66 |
3.24 |
1 |
1.75 |
4 |
6.25 |
12 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
What.study
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| What.study |
numeric |
29 |
44 |
73 |
3.66 |
3.02 |
1 |
1 |
3 |
6 |
11 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
Origin
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| Origin |
numeric |
29 |
44 |
73 |
1.57 |
1.52 |
1 |
1 |
1 |
1 |
8 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
EPDS
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| EPDS |
numeric |
29 |
44 |
73 |
7.93 |
5.03 |
2 |
4 |
6 |
11 |
24 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
depreposparto
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| depreposparto |
numeric |
29 |
44 |
73 |
1.36 |
0.49 |
1 |
1 |
1 |
2 |
2 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
StateCivilDIcotomica
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| StateCivilDIcotomica |
numeric |
29 |
44 |
73 |
0.59 |
0.5 |
0 |
0 |
1 |
1 |
1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
EmploymentSituationDico
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| EmploymentSituationDico |
numeric |
29 |
44 |
73 |
0.77 |
0.42 |
0 |
1 |
1 |
1 |
1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
PetDicotomica
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| PetDicotomica |
numeric |
29 |
44 |
73 |
0.36 |
0.49 |
0 |
0 |
0 |
1 |
1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
NationalityDicotomica
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| NationalityDicotomica |
numeric |
29 |
44 |
73 |
0.82 |
0.39 |
0 |
1 |
1 |
1 |
1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
PregnancyMethodDico
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| PregnancyMethodDico |
numeric |
29 |
44 |
73 |
0.8 |
0.41 |
0 |
1 |
1 |
1 |
1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
PreviousMiscarriagesDico
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| PreviousMiscarriagesDico |
numeric |
29 |
44 |
73 |
0.25 |
0.44 |
0 |
0 |
0 |
0.25 |
1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
WantedPregnancyDico
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| WantedPregnancyDico |
numeric |
29 |
44 |
73 |
0.84 |
0.37 |
0 |
1 |
1 |
1 |
1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
Occupation123
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| Occupation123 |
numeric |
29 |
44 |
73 |
2.2 |
0.88 |
1 |
1 |
2.5 |
3 |
3 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
LNCORTISOL1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| LNCORTISOL1 |
numeric |
29 |
44 |
73 |
5.25 |
0.75 |
3.95 |
4.72 |
5.27 |
5.64 |
7.41 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
LNCORTISOL2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| LNCORTISOL2 |
numeric |
29 |
44 |
73 |
5.4 |
0.47 |
4.36 |
5.11 |
5.42 |
5.71 |
6.46 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
LNCORTISOL3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| LNCORTISOL3 |
numeric |
29 |
44 |
73 |
5.74 |
0.53 |
4.57 |
5.43 |
5.76 |
6.06 |
7.1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
SexFetal
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| SexFetal |
numeric |
29 |
44 |
73 |
0.46 |
0.45 |
0 |
0 |
0.26 |
1 |
1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
PDQ1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| PDQ1 |
numeric |
29 |
44 |
73 |
14.64 |
6.17 |
4 |
10 |
14 |
17.25 |
30 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
PDQ2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| PDQ2 |
numeric |
29 |
44 |
73 |
13.18 |
5.17 |
4 |
11 |
13 |
15.5 |
31 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
PDQ3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| PDQ3 |
numeric |
29 |
44 |
73 |
12.52 |
4.46 |
2 |
8 |
13 |
16 |
21 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
EEP1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| EEP1 |
numeric |
29 |
44 |
73 |
26.3 |
2.13 |
22 |
25 |
26 |
27 |
31 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
EEP2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| EEP2 |
numeric |
29 |
44 |
73 |
26.77 |
1.43 |
24 |
26 |
27 |
28 |
29 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
EEP3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| EEP3 |
numeric |
29 |
44 |
73 |
27.2 |
1.53 |
24 |
26 |
27 |
28 |
30 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
SOMATIZATIONS1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| SOMATIZATIONS1 |
numeric |
29 |
44 |
73 |
62.06 |
24.65 |
5 |
50 |
65 |
80 |
97 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
OBSESSIONS.AND.COMPULSIONS1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| OBSESSIONS.AND.COMPULSIONS1 |
numeric |
29 |
44 |
73 |
57.25 |
23.73 |
5 |
46.97 |
52.39 |
68.36 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
SENSITIVIDADINTERPERSONAL1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| SENSITIVIDADINTERPERSONAL1 |
numeric |
29 |
44 |
73 |
42.65 |
22.43 |
5 |
35.37 |
43.13 |
50.25 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
DEPRESSION1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| DEPRESSION1 |
numeric |
29 |
44 |
73 |
43.49 |
21.44 |
5 |
33.75 |
40.28 |
48.71 |
97 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
ANXIETY1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| ANXIETY1 |
numeric |
29 |
44 |
73 |
56.59 |
24.87 |
5 |
47.75 |
55.94 |
71.25 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
HOSTILIDAD1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| HOSTILIDAD1 |
numeric |
29 |
44 |
73 |
52.46 |
20.77 |
5 |
47.25 |
51.01 |
60 |
95 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
ANSIEDADFOBICA1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| ANSIEDADFOBICA1 |
numeric |
29 |
44 |
73 |
72.45 |
17.99 |
5 |
65.08 |
74.83 |
85 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
IDEACIÃ.NPARANOIDE1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| IDEACIÃ.NPARANOIDE1 |
numeric |
29 |
44 |
73 |
62.68 |
24.52 |
5 |
57.89 |
64.58 |
72.5 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
PSICOTICISMO1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| PSICOTICISMO1 |
numeric |
29 |
44 |
73 |
70.3 |
19.08 |
5 |
64.76 |
73.29 |
81.25 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
IGS1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| IGS1 |
numeric |
29 |
44 |
73 |
55.09 |
23.26 |
5 |
45.28 |
54.08 |
66.25 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
SP1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| SP1 |
numeric |
29 |
44 |
73 |
56.07 |
23.39 |
5 |
48 |
55.57 |
63.96 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
PSDI1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| PSDI1 |
numeric |
29 |
44 |
73 |
49.8 |
23.57 |
5 |
35 |
49.93 |
60 |
97 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
SOMATIZATIONS2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| SOMATIZATIONS2 |
numeric |
29 |
44 |
73 |
47.01 |
20.12 |
10 |
40 |
45.99 |
50 |
95 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
OBSESSIONS.AND.COMPULSIONS2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| OBSESSIONS.AND.COMPULSIONS2 |
numeric |
29 |
44 |
73 |
57.73 |
23.49 |
5 |
45 |
56.63 |
75 |
97 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
INSTRUMENT.SENSITIVITY2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| INSTRUMENT.SENSITIVITY2 |
numeric |
29 |
44 |
73 |
45.67 |
20.33 |
5 |
35 |
45 |
55 |
97 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
DEPRESSION2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| DEPRESSION2 |
numeric |
29 |
44 |
73 |
36.33 |
22.03 |
5 |
24.03 |
30.75 |
43.14 |
90 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
ANXIETY2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| ANXIETY2 |
numeric |
29 |
44 |
73 |
48.52 |
24.37 |
5 |
30 |
47.03 |
60 |
95 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
HOSTILITY2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| HOSTILITY2 |
numeric |
29 |
44 |
73 |
42.35 |
23.52 |
5 |
35.28 |
40.15 |
60 |
90 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
ANSIEDADFOBICA2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| ANSIEDADFOBICA2 |
numeric |
29 |
44 |
73 |
62.92 |
21.44 |
5 |
57.23 |
60 |
77.75 |
98 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
IDEACIÃ.NPARANOIDE2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| IDEACIÃ.NPARANOIDE2 |
numeric |
29 |
44 |
73 |
56.5 |
23.03 |
5 |
50.54 |
57.41 |
70 |
97 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
PSICOTICISMO2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| PSICOTICISMO2 |
numeric |
29 |
44 |
73 |
61.91 |
21.51 |
5 |
57.25 |
61.7 |
80 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
IGS2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| IGS2 |
numeric |
29 |
44 |
73 |
47.4 |
24.24 |
5 |
36.31 |
44.78 |
56.25 |
97 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
SP2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| SP2 |
numeric |
29 |
44 |
73 |
50.43 |
24.32 |
5 |
38.75 |
48 |
55 |
98 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
PSDI2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| PSDI2 |
numeric |
29 |
44 |
73 |
40.11 |
21.51 |
5 |
28.75 |
39.67 |
50 |
85 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
SOMATIZATIONS3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| SOMATIZATIONS3 |
numeric |
29 |
44 |
73 |
55.59 |
24.42 |
15 |
35 |
55.46 |
80 |
97 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
OBSESSIONS.AND.COMPULSIONS3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| OBSESSIONS.AND.COMPULSIONS3 |
numeric |
29 |
44 |
73 |
67.85 |
28.95 |
5 |
50 |
77.78 |
90 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
INSTRUMENT.SENSITIVITY3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| INSTRUMENT.SENSITIVITY3 |
numeric |
29 |
44 |
73 |
53.67 |
29.26 |
5 |
31.25 |
54.59 |
81.25 |
97 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
DEPRESSION3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| DEPRESSION3 |
numeric |
29 |
44 |
73 |
49.82 |
26.46 |
5 |
28.75 |
51.95 |
66.25 |
97 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
ANXIETY3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| ANXIETY3 |
numeric |
29 |
44 |
73 |
59.47 |
26.57 |
5 |
45 |
61.32 |
80 |
95 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
HOSTILIDAD3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| HOSTILIDAD3 |
numeric |
29 |
44 |
73 |
49.12 |
29.71 |
5 |
35 |
45.27 |
72.5 |
95 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
ANSIEDADFOBICA3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| ANSIEDADFOBICA3 |
numeric |
29 |
44 |
73 |
72.67 |
27.34 |
5 |
63.09 |
80 |
91.25 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
IDEACIÃ.NPARANOIDE3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| IDEACIÃ.NPARANOIDE3 |
numeric |
29 |
44 |
73 |
65.94 |
26.9 |
5 |
56.75 |
70 |
86.25 |
97 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
PSICOTICISMO3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| PSICOTICISMO3 |
numeric |
29 |
44 |
73 |
67.49 |
28.83 |
5 |
56.25 |
70 |
91.25 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
IGS3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| IGS3 |
numeric |
29 |
44 |
73 |
60.29 |
29.26 |
5 |
35 |
63.46 |
90 |
97 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
SP3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| SP3 |
numeric |
29 |
44 |
73 |
58.42 |
29.84 |
5 |
35 |
57.5 |
85 |
99 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
PSDI3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| PSDI3 |
numeric |
29 |
44 |
73 |
47.21 |
19.79 |
5 |
35 |
48 |
58.5 |
85 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
SexFetalDico
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
0 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| SexFetalDico |
integer |
0 |
73 |
73 |
0.23 |
0.43 |
0 |
0 |
0 |
0 |
1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
Cortisol1
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| Cortisol1 |
numeric |
29 |
44 |
73 |
261.51 |
277.67 |
51.68 |
112.2 |
194.5 |
281.43 |
1649 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
Cortisol2
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| Cortisol2 |
numeric |
29 |
44 |
73 |
246.8 |
119.54 |
78.64 |
165.53 |
225 |
302.57 |
636.1 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
Cortisol3
Distribution
show_missings <- FALSE
if (has_label(item)) {
missings <- item[is.na(haven::zap_missing(item))]
attributes(missings) <- attributes(item)
if (!is.null(attributes(item)$labels)) {
attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
}
if (is.numeric(item)) {
show_missings <- length(unique(haven::na_tag(missings))) > 1
item <- haven::zap_missing(item)
}
if (length(item_attributes$labels) == 0 && is.numeric(item)) {
item <- haven::zap_labels(item)
}
}
item_nomiss <- item[!is.na(item)]
# unnest mc_multiple and so on
if (
is.character(item_nomiss) &&
stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
(exists("type", item_info) &&
stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
) {
item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)
old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
# numeric items are plotted horizontally (because that's what usually expected)
# categorical items are plotted vertically because we can use the screen real estate better this way
if (is.null(choices) ||
dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
non_missing_choices <- unique(item_nomiss)
names(non_missing_choices) <- non_missing_choices
}
choice_multiplier <- old_height/6.5
new_height <- 2 + choice_multiplier * length(non_missing_choices)
new_height <- ifelse(new_height > 20, 20, new_height)
new_height <- ifelse(new_height < 1, 1, new_height)
knitr::opts_chunk$set(fig.height = new_height)
}
wrap_at <- knitr::opts_chunk$get("fig.width") * 10
# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)
29 missings.
Summary statistics
attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))
| Cortisol3 |
numeric |
29 |
44 |
73 |
356.65 |
199.54 |
96.5 |
228.01 |
316.3 |
429.1 |
1213 |
|
if (show_missings) {
plot_labelled(missings, item_name, wrap_at)
}
if (!is.null(item_info)) {
# don't show choices again, if they're basically same thing as value labels
if (!is.null(choices) && !is.null(item_info$choices) &&
all(names(na.omit(choices)) == item_info$choices) &&
all(na.omit(choices) == names(item_info$choices))) {
item_info$choices <- NULL
}
item_info$label_parsed <-
item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
pander::pander(item_info)
}
if (!is.null(choices) && length(choices) && length(choices) < 30) {
pander::pander(as.list(choices))
}
missingness_report
Missingness report
Among those who finished the survey. Only variables that have missings are shown.
if ( exists("ended", results) &&
exists("expired", results)) {
finisher_results <- dplyr::filter(results, !is.na(.data$ended))
} else {
finisher_results <- results
warning("Could not figure out who finished the surveys, because the ",
"variables expired and ended were missing.")
}
## Warning: Could not figure out who finished the surveys, because the
## variables expired and ended were missing.
if (length(md_pattern)) {
pander::pander(md_pattern)
}
Table continues below
| Missings per variable |
29 |
29 |
29 |
29 |
| Missings in 0 variables |
1 |
1 |
1 |
1 |
| Missings in 70 variables |
0 |
0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
29 |
29 |
29 |
| 1 |
1 |
1 |
1 |
1 |
1 |
| 0 |
0 |
0 |
0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
29 |
29 |
| 1 |
1 |
1 |
1 |
1 |
| 0 |
0 |
0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
| 1 |
1 |
1 |
| 0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
29 |
| 1 |
1 |
1 |
1 |
| 0 |
0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
29 |
29 |
29 |
29 |
29 |
29 |
| 1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
| 0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
| 1 |
1 |
1 |
| 0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
29 |
29 |
| 1 |
1 |
1 |
1 |
1 |
| 0 |
0 |
0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
29 |
29 |
| 1 |
1 |
1 |
1 |
1 |
| 0 |
0 |
0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
29 |
| 1 |
1 |
1 |
1 |
| 0 |
0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
29 |
29 |
| 1 |
1 |
1 |
1 |
1 |
| 0 |
0 |
0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
29 |
| 1 |
1 |
1 |
1 |
| 0 |
0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
29 |
| 1 |
1 |
1 |
1 |
| 0 |
0 |
0 |
0 |
Table continues below
| 29 |
29 |
29 |
29 |
29 |
29 |
| 1 |
1 |
1 |
1 |
1 |
1 |
| 0 |
0 |
0 |
0 |
0 |
0 |
| 29 |
29 |
29 |
2030 |
2030 |
| 1 |
1 |
1 |
0 |
44 |
| 0 |
0 |
0 |
70 |
29 |
items
Codebook table
export_table(metadata_table)
jsonld