Data_Delivery

MATH 630 GROUP PROJECT

PART 2 : DATA DELIVERY

GROUP 7 : Nate Evans, Win-Chun Lin, Alfonso Poire

PAPER: Hair cortisol levels, psychological stress and psychopathological symptoms as predictors of postpartum depression

DATA: sav file

TIDY DATA: csv file

CODE BOOK: excel file?

The purpose of this R markdown script is to produce the following components, as detailed in the Ellis & Leek paper, with respect to our paper. For all the links to work, it is best to clone the the github repository and access this script within the cloned file strucutre (located: FINAL_PROJECT/postpartum_depression_predicition/P2/group7_DataDelivery.Rmd).

1. The raw data : This is provided in the link above, and/or as the .sav file uploaded to sakai
2. A tidy data set (Wickham 2014) : This will be proided in the link above as well as uploaded to sakai, depending on file structure, the link may be broken
3. A code book describing each variable and its values in the tidy data set. [do this for all variables that will be part of your replication analyses] describe ???
4. An explicit and exact recipe you used to go from 1 -> 2,3. This rmd script serves as the recipe from 1 -> 2,3

Generating a tidy dataset

The first step we took to produce a tidy dataset was to translate the variable names from english to spanish, to do this, we first attempted a programatic method; Using the google translate API, each variable name was attempted to translate from Spanish to English.

path = "./../../data/PPD_hairCortisol_PlosOne_.sav"

dataset= read_sav(path)

write.csv(dataset, file = "./../../data/data_span.csv")

import googletrans as gt 
import pandas as pd
data = pd.read_csv('./../../data/data_span.csv',encoding = "ISO-8859-1")
trans = gt.Translator()
with open("./../../data/data_programatic_translation.csv", 'w') as f: 
  f.write('original, translated\n')
  for old_col in data.columns.values:  
    new_col = trans.translate(old_col, src = 'spanish', dest='en').text
    f.write(old_col + ',' + new_col + '\n')
    
    data.rename(columns = {old_col:new_col}, inplace = True)
  
data.to_csv( "./../../data/data_eng.csv" )

This produces two files, first, a new dataset csv with the header names translated (attempted) and two, a csv documenting the original variable name and the translated variable name.

english csv
translation mapping

ALL VARIABLES WE NEED TO INCLUDE IN OUR DATASET

These listed variables are those required to reproduce the paper plots or extend the study.

Paper Variables

We will try to manually review, translate and generate a codebook (Good tutorial: github) in the following steps.

df = read.csv("./../../data/data_eng.csv", header = TRUE)
df %>% variable.names()

##  [1] "X"                           "Unnamed..0"                 
##  [3] "Competitor"                  "Age"                        
##  [5] "FirstPregnancy"              "Pregnancy.type"             
##  [7] "Level_Studies"               "SLaboral"                   
##  [9] "Appearance"                  "Sport"                      
## [11] "Profession"                  "What.study"                 
## [13] "Origin"                      "EPDS"                       
## [15] "depreposparto"               "StateCivilDIcotomica"       
## [17] "EmploymentSituationDico"     "PetDicotomica"              
## [19] "NationalityDicotomica"       "PregnancyMethodDico"        
## [21] "PreviousMiscarriagesDico"    "WantedPregnancyDico"        
## [23] "Occupation123"               "LNCORTISOL1"                
## [25] "LNCORTISOL2"                 "LNCORTISOL3"                
## [27] "SexFetal"                    "PDQ1"                       
## [29] "PDQ2"                        "PDQ3"                       
## [31] "EEP1"                        "EEP2"                       
## [33] "EEP3"                        "SOMATIZATIONS1"             
## [35] "OBSESSIONS.AND.COMPULSIONS1" "SENSITIVIDADINTERPERSONAL1" 
## [37] "DEPRESSION1"                 "ANXIETY1"                   
## [39] "HOSTILIDAD1"                 "ANSIEDADFOBICA1"            
## [41] "IDEACIÃ.NPARANOIDE1"         "PSICOTICISMO1"              
## [43] "IGS1"                        "SP1"                        
## [45] "PSDI1"                       "SOMATIZATIONS2"             
## [47] "OBSESSIONS.AND.COMPULSIONS2" "INSTRUMENT.SENSITIVITY2"    
## [49] "DEPRESSION2"                 "ANXIETY2"                   
## [51] "HOSTILITY2"                  "ANSIEDADFOBICA2"            
## [53] "IDEACIÃ.NPARANOIDE2"         "PSICOTICISMO2"              
## [55] "IGS2"                        "SP2"                        
## [57] "PSDI2"                       "SOMATIZATIONS3"             
## [59] "OBSESSIONS.AND.COMPULSIONS3" "INSTRUMENT.SENSITIVITY3"    
## [61] "DEPRESSION3"                 "ANXIETY3"                   
## [63] "HOSTILIDAD3"                 "ANSIEDADFOBICA3"            
## [65] "IDEACIÃ.NPARANOIDE3"         "PSICOTICISMO3"              
## [67] "IGS3"                        "SP3"                        
## [69] "PSDI3"                       "SexFetalDico"               
## [71] "Cortisol1"                   "Cortisol2"                  
## [73] "Cortisol3"

df <- df %>% select(-X, -Unnamed..0) 

# THIS IS WHERE WE CAN DROP UNUNSED VARIABLES, MUTATE NAMES AND ADD META DATA DESCRIBING VARIABLES



my_codebook <- codebook(df)

## Warning in codebook(df): The variables session, created, ended have to
## be defined for automatic survey repetition detection to work. Set to no
## repetition by default.

#fh <- file("./../../data/codebook.html")
#writeLines(my_codebook, fh)
#close(fh)

my_codebook

knitr::asis_output(survey_overview)

Items

knitr::asis_output(paste0(scales_items, sep = "\n\n\n", collapse = "\n\n\n"))

Competitor

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
Competitor	numeric	29	44	73	22.5	12.85	1	11.75	22.5	33.25	44

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

Age

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
Age	numeric	29	44	73	32.41	3.88	24	30	32	36	39

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

FirstPregnancy

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
FirstPregnancy	numeric	29	44	73	0.64	0.49	0	0	1	1	1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

Pregnancy.type

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
Pregnancy.type	numeric	29	44	73	1.32	0.67	1	1	1	1	3

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

Level_Studies

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
Level_Studies	numeric	29	44	73	2.75	0.49	1	3	3	3	3

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

SLaboral

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
SLaboral	numeric	29	44	73	2.18	0.95	1	2	2	2	5

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

Appearance

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
Appearance	numeric	29	44	73	0.43	0.5	0	0	0	1	1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

Sport

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
Sport	numeric	29	44	73	0.59	0.5	0	0	1	1	1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

Profession

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
Profession	numeric	29	44	73	4.66	3.24	1	1.75	4	6.25	12

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

What.study

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
What.study	numeric	29	44	73	3.66	3.02	1	1	3	6	11

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

Origin

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
Origin	numeric	29	44	73	1.57	1.52	1	1	1	1	8

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

EPDS

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
EPDS	numeric	29	44	73	7.93	5.03	2	4	6	11	24

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

depreposparto

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
depreposparto	numeric	29	44	73	1.36	0.49	1	1	1	2	2

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

StateCivilDIcotomica

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
StateCivilDIcotomica	numeric	29	44	73	0.59	0.5	0	0	1	1	1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

EmploymentSituationDico

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
EmploymentSituationDico	numeric	29	44	73	0.77	0.42	0	1	1	1	1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

PetDicotomica

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
PetDicotomica	numeric	29	44	73	0.36	0.49	0	0	0	1	1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

NationalityDicotomica

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
NationalityDicotomica	numeric	29	44	73	0.82	0.39	0	1	1	1	1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

PregnancyMethodDico

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
PregnancyMethodDico	numeric	29	44	73	0.8	0.41	0	1	1	1	1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

PreviousMiscarriagesDico

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
PreviousMiscarriagesDico	numeric	29	44	73	0.25	0.44	0	0	0	0.25	1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

WantedPregnancyDico

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
WantedPregnancyDico	numeric	29	44	73	0.84	0.37	0	1	1	1	1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

Occupation123

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
Occupation123	numeric	29	44	73	2.2	0.88	1	1	2.5	3	3

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

LNCORTISOL1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
LNCORTISOL1	numeric	29	44	73	5.25	0.75	3.95	4.72	5.27	5.64	7.41

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

LNCORTISOL2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
LNCORTISOL2	numeric	29	44	73	5.4	0.47	4.36	5.11	5.42	5.71	6.46

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

LNCORTISOL3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
LNCORTISOL3	numeric	29	44	73	5.74	0.53	4.57	5.43	5.76	6.06	7.1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

SexFetal

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
SexFetal	numeric	29	44	73	0.46	0.45	0	0	0.26	1	1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

PDQ1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
PDQ1	numeric	29	44	73	14.64	6.17	4	10	14	17.25	30

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

PDQ2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
PDQ2	numeric	29	44	73	13.18	5.17	4	11	13	15.5	31

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

PDQ3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
PDQ3	numeric	29	44	73	12.52	4.46	2	8	13	16	21

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

EEP1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
EEP1	numeric	29	44	73	26.3	2.13	22	25	26	27	31

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

EEP2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
EEP2	numeric	29	44	73	26.77	1.43	24	26	27	28	29

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

EEP3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
EEP3	numeric	29	44	73	27.2	1.53	24	26	27	28	30

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

SOMATIZATIONS1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
SOMATIZATIONS1	numeric	29	44	73	62.06	24.65	5	50	65	80	97

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

OBSESSIONS.AND.COMPULSIONS1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
OBSESSIONS.AND.COMPULSIONS1	numeric	29	44	73	57.25	23.73	5	46.97	52.39	68.36	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

SENSITIVIDADINTERPERSONAL1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
SENSITIVIDADINTERPERSONAL1	numeric	29	44	73	42.65	22.43	5	35.37	43.13	50.25	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

DEPRESSION1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
DEPRESSION1	numeric	29	44	73	43.49	21.44	5	33.75	40.28	48.71	97

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

ANXIETY1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
ANXIETY1	numeric	29	44	73	56.59	24.87	5	47.75	55.94	71.25	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

HOSTILIDAD1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
HOSTILIDAD1	numeric	29	44	73	52.46	20.77	5	47.25	51.01	60	95

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

ANSIEDADFOBICA1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
ANSIEDADFOBICA1	numeric	29	44	73	72.45	17.99	5	65.08	74.83	85	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

IDEACIÃ.NPARANOIDE1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
IDEACIÃ.NPARANOIDE1	numeric	29	44	73	62.68	24.52	5	57.89	64.58	72.5	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

PSICOTICISMO1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
PSICOTICISMO1	numeric	29	44	73	70.3	19.08	5	64.76	73.29	81.25	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

IGS1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
IGS1	numeric	29	44	73	55.09	23.26	5	45.28	54.08	66.25	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

SP1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
SP1	numeric	29	44	73	56.07	23.39	5	48	55.57	63.96	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

PSDI1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
PSDI1	numeric	29	44	73	49.8	23.57	5	35	49.93	60	97

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

SOMATIZATIONS2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
SOMATIZATIONS2	numeric	29	44	73	47.01	20.12	10	40	45.99	50	95

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

OBSESSIONS.AND.COMPULSIONS2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
OBSESSIONS.AND.COMPULSIONS2	numeric	29	44	73	57.73	23.49	5	45	56.63	75	97

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

INSTRUMENT.SENSITIVITY2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
INSTRUMENT.SENSITIVITY2	numeric	29	44	73	45.67	20.33	5	35	45	55	97

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

DEPRESSION2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
DEPRESSION2	numeric	29	44	73	36.33	22.03	5	24.03	30.75	43.14	90

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

ANXIETY2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
ANXIETY2	numeric	29	44	73	48.52	24.37	5	30	47.03	60	95

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

HOSTILITY2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
HOSTILITY2	numeric	29	44	73	42.35	23.52	5	35.28	40.15	60	90

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

ANSIEDADFOBICA2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
ANSIEDADFOBICA2	numeric	29	44	73	62.92	21.44	5	57.23	60	77.75	98

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

IDEACIÃ.NPARANOIDE2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
IDEACIÃ.NPARANOIDE2	numeric	29	44	73	56.5	23.03	5	50.54	57.41	70	97

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

PSICOTICISMO2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
PSICOTICISMO2	numeric	29	44	73	61.91	21.51	5	57.25	61.7	80	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

IGS2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
IGS2	numeric	29	44	73	47.4	24.24	5	36.31	44.78	56.25	97

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

SP2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
SP2	numeric	29	44	73	50.43	24.32	5	38.75	48	55	98

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

PSDI2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
PSDI2	numeric	29	44	73	40.11	21.51	5	28.75	39.67	50	85

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

SOMATIZATIONS3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
SOMATIZATIONS3	numeric	29	44	73	55.59	24.42	15	35	55.46	80	97

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

OBSESSIONS.AND.COMPULSIONS3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
OBSESSIONS.AND.COMPULSIONS3	numeric	29	44	73	67.85	28.95	5	50	77.78	90	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

INSTRUMENT.SENSITIVITY3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
INSTRUMENT.SENSITIVITY3	numeric	29	44	73	53.67	29.26	5	31.25	54.59	81.25	97

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

DEPRESSION3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
DEPRESSION3	numeric	29	44	73	49.82	26.46	5	28.75	51.95	66.25	97

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

ANXIETY3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
ANXIETY3	numeric	29	44	73	59.47	26.57	5	45	61.32	80	95

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

HOSTILIDAD3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
HOSTILIDAD3	numeric	29	44	73	49.12	29.71	5	35	45.27	72.5	95

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

ANSIEDADFOBICA3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
ANSIEDADFOBICA3	numeric	29	44	73	72.67	27.34	5	63.09	80	91.25	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

IDEACIÃ.NPARANOIDE3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
IDEACIÃ.NPARANOIDE3	numeric	29	44	73	65.94	26.9	5	56.75	70	86.25	97

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

PSICOTICISMO3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
PSICOTICISMO3	numeric	29	44	73	67.49	28.83	5	56.25	70	91.25	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

IGS3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
IGS3	numeric	29	44	73	60.29	29.26	5	35	63.46	90	97

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

SP3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
SP3	numeric	29	44	73	58.42	29.84	5	35	57.5	85	99

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

PSDI3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
PSDI3	numeric	29	44	73	47.21	19.79	5	35	48	58.5	85

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

SexFetalDico

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

0 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
SexFetalDico	integer	0	73	73	0.23	0.43	0	0	0	0	1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

Cortisol1

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
Cortisol1	numeric	29	44	73	261.51	277.67	51.68	112.2	194.5	281.43	1649

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

Cortisol2

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
Cortisol2	numeric	29	44	73	246.8	119.54	78.64	165.53	225	302.57	636.1

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

Cortisol3

Distribution

show_missings <- FALSE
if (has_label(item)) {
  missings <- item[is.na(haven::zap_missing(item))]
  attributes(missings) <- attributes(item)
  if (!is.null(attributes(item)$labels)) {
    attributes(missings)$labels <- attributes(missings)$labels[is.na(attributes(missings)$labels)]
    attributes(item)$labels <- attributes(item)$labels[!is.na(attributes(item)$labels)]
  }
  if (is.numeric(item)) {
    show_missings <- length(unique(haven::na_tag(missings))) > 1
    item <- haven::zap_missing(item)
  }
  if (length(item_attributes$labels) == 0 && is.numeric(item)) {
    item <- haven::zap_labels(item)
  }
}
item_nomiss <- item[!is.na(item)]

# unnest mc_multiple and so on
if (
  is.character(item_nomiss) &&
  stringr::str_detect(item_nomiss, stringr::fixed(", ")) &&
  (exists("type", item_info) && 
    stringr::str_detect(item_info$type, pattern = stringr::fixed("multiple")))
  ) {
  item_nomiss <- unlist(stringr::str_split(item_nomiss, pattern = stringr::fixed(", ")))
}
attributes(item_nomiss) <- attributes(item)

old_height <- knitr::opts_chunk$get("fig.height")
non_missing_choices <- item_attributes[["labels"]]
many_labels <- length(non_missing_choices) > 7
go_vertical <- !is.numeric(item_nomiss) || many_labels
if ( go_vertical ) {
  # numeric items are plotted horizontally (because that's what usually expected)
  # categorical items are plotted vertically because we can use the screen real estate better this way

    if (is.null(choices) || 
        dplyr::n_distinct(item_nomiss) > length(non_missing_choices)) {
        non_missing_choices <- unique(item_nomiss)
        names(non_missing_choices) <- non_missing_choices
    }
  choice_multiplier <- old_height/6.5
    new_height <- 2 + choice_multiplier * length(non_missing_choices)
    new_height <- ifelse(new_height > 20, 20, new_height)
    new_height <- ifelse(new_height < 1, 1, new_height)
    knitr::opts_chunk$set(fig.height = new_height)
}

wrap_at <- knitr::opts_chunk$get("fig.width") * 10

# todo: if there are free-text choices mingled in with the pre-defined ones, don't show
# todo: show rare items if they are pre-defined
# todo: bin rare responses into "other category"
if (!length(item_nomiss)) {
  cat("No non-missing values to show.")
} else if (is.numeric(item_nomiss) || dplyr::n_distinct(item_nomiss) < 20) {
  plot_labelled(item_nomiss, item_name, wrap_at, go_vertical)
} else {
    cat(dplyr::n_distinct(item_nomiss), " unique, categorical values, so not shown.")
}

knitr::opts_chunk$set(fig.height = old_height)

29 missings.

Summary statistics

attributes(item) <- item_attributes
df = data.frame(item, stringsAsFactors = FALSE)
names(df) = html_item_name
escaped_table(codebook_table(df))

name	data_type	missing	complete	n	mean	sd	p0	p25	p50	p75	p100	hist
Cortisol3	numeric	29	44	73	356.65	199.54	96.5	228.01	316.3	429.1	1213

if (show_missings) {
  plot_labelled(missings, item_name, wrap_at)
}

if (!is.null(item_info)) {
  # don't show choices again, if they're basically same thing as value labels
  if (!is.null(choices) && !is.null(item_info$choices) && 
    all(names(na.omit(choices)) == item_info$choices) &&
    all(na.omit(choices) == names(item_info$choices))) {
    item_info$choices <- NULL
  }
  item_info$label_parsed <- 
    item_info$choice_list <- item_info$study_id <- item_info$id <- NULL
  pander::pander(item_info)
}

if (!is.null(choices) && length(choices) && length(choices) < 30) {
    pander::pander(as.list(choices))
}

missingness_report

Missingness report

Among those who finished the survey. Only variables that have missings are shown.

if (  exists("ended", results) &&
  exists("expired", results)) {
  finisher_results <- dplyr::filter(results, !is.na(.data$ended))
} else {
  finisher_results <- results
  warning("Could not figure out who finished the surveys, because the ",
          "variables expired and ended were missing.")
}

## Warning: Could not figure out who finished the surveys, because the
## variables expired and ended were missing.

if (length(md_pattern)) {
  pander::pander(md_pattern)
}

Table continues below

description	Competitor	Age	FirstPregnancy	Pregnancy.type
Missings per variable	29	29	29	29
Missings in 0 variables	1	1	1	1
Missings in 70 variables	0	0	0	0

Table continues below

Level_Studies	SLaboral	Appearance	Sport	Profession	What.study
29	29	29	29	29	29
1	1	1	1	1	1
0	0	0	0	0	0

Table continues below

Origin	EPDS	depreposparto	StateCivilDIcotomica	EmploymentSituationDico
29	29	29	29	29
1	1	1	1	1
0	0	0	0	0

Table continues below

PetDicotomica	NationalityDicotomica	PregnancyMethodDico
29	29	29
1	1	1
0	0	0

Table continues below

PreviousMiscarriagesDico	WantedPregnancyDico	Occupation123	LNCORTISOL1
29	29	29	29
1	1	1	1
0	0	0	0

Table continues below

LNCORTISOL2	LNCORTISOL3	SexFetal	PDQ1	PDQ2	PDQ3	EEP1	EEP2	EEP3
29	29	29	29	29	29	29	29	29
1	1	1	1	1	1	1	1	1
0	0	0	0	0	0	0	0	0

Table continues below

SOMATIZATIONS1	OBSESSIONS.AND.COMPULSIONS1	SENSITIVIDADINTERPERSONAL1
29	29	29
1	1	1
0	0	0

Table continues below

DEPRESSION1	ANXIETY1	HOSTILIDAD1	ANSIEDADFOBICA1	IDEACIÃ.NPARANOIDE1
29	29	29	29	29
1	1	1	1	1
0	0	0	0	0

Table continues below

PSICOTICISMO1	IGS1	SP1	PSDI1	SOMATIZATIONS2
29	29	29	29	29
1	1	1	1	1
0	0	0	0	0

Table continues below

OBSESSIONS.AND.COMPULSIONS2	INSTRUMENT.SENSITIVITY2	DEPRESSION2	ANXIETY2
29	29	29	29
1	1	1	1
0	0	0	0

Table continues below

HOSTILITY2	ANSIEDADFOBICA2	IDEACIÃ.NPARANOIDE2	PSICOTICISMO2	IGS2
29	29	29	29	29
1	1	1	1	1
0	0	0	0	0

Table continues below

SP2	PSDI2	SOMATIZATIONS3	OBSESSIONS.AND.COMPULSIONS3
29	29	29	29
1	1	1	1
0	0	0	0

Table continues below

INSTRUMENT.SENSITIVITY3	DEPRESSION3	ANXIETY3	HOSTILIDAD3
29	29	29	29
1	1	1	1
0	0	0	0

Table continues below

ANSIEDADFOBICA3	IDEACIÃ.NPARANOIDE3	PSICOTICISMO3	IGS3	SP3	PSDI3
29	29	29	29	29	29
1	1	1	1	1	1
0	0	0	0	0	0

Cortisol1	Cortisol2	Cortisol3	var_miss	n_miss
29	29	29	2030	2030
1	1	1	0	44
0	0	0	70	29

items

Codebook table

export_table(metadata_table)

jsonld

REFERENCES

[1] codebook package:

Preprint Arslan, R. C. (2018). How to automatically generate rich codebooks from study metadata. doi:10.31234/osf.io/5qc6h

Zenodo Arslan, R. C. (2018). Automatic codebooks from survey metadata (2018). URL https://github.com/rubenarslan/codebook. DOI